Synapse Help Forum


Created By Jay Hodgson jay

Synapse notifications are going to my GMail Spam folder
Download filed:Stuck when progress is 97.74%
ValueError: File download failed during sync
Can't find Project SynlD: syn51761394 request permission to download
Failed to download the levadopa dataset
Agora Biological Domain data...
Oauth Client ID verification
Unable to access files for Project syn7248578
Synapse client keep failing download
Question about the Yale-ASD data
Login issue with invalid access token
Broken link to download files?
Cannot download evaluation queue submissions
SynapseHTTPError: 403 Client Error: insufficient_scope. Request lacks scope(s) required by this service: modify
Unable to open the page when downloading separately
Ineligible for packing
Got error Breaking lock whose age is xxx
"Requests are too frequent for API call"
Inserting line break within a table
Unable to login - new phone and 2FA
issue logging in trough command line & use in R
Login issue with invalid access token
Synapse client keep failing download
Firewall rules
Users cannot access challenge tab or see evaluation queues when linked
ICGC-TCGA-DREAM Somatic Mutation Calling Challenge data access unavalialbe
How to become a Validated user
Don't have permission to download
Object syn52966293 does not have a file handle associated with it
Rerun the same code but it does not work
CLI function to export only complete recursive manifest?
logging in
Does Synapse provide paediatric individual patient data (IPD) from clinical trials?
API to get Wiki content
Unable to upload `.tar.gz` file
download could not be completed
The data folder was empty in syn26067521
Can I upload my code to get evaluated if it working correctly
syn51365303 project - fail to download data
Exporting data into private S3 bucket
Unable to access data SynID: syn51713741
Re-Validation of User Profile
Unable to access Data : syn36848078
Individuals' mutation listing
READ access to Synapse:syn7806859
did not see my results in the Leaderboard
Add project name and parent name to File View Exported CSV
Some RNA-seq fastq files fail to download via API.
Unable to use synapseutils
Major difficulties installing "synapser" R client on macOS due to PythonEmbedInR build failure
SynapseHTTPError: 400 Client Error: Batch must contain at least one item
Download Limits reached - [WARNING] Requests are too frequent for API call: allow 240 requests per 60 seconds
ROSMAP gene expression microarray data ? area
Parkinson?s disease - transcriptomic data
How to get access to controlled data on Synapse?
Trouble downloading files due to python version
synapseclient auth issues
Download a list of team members
Error uploading file using "synapse sync"
GDPR compliance
Synapse password for google account login
Resubmission files to the challenge is denied
Adding a new authorized user before renewal is due
About participating in the 2015 abdominal multi-class segmentation task
Help with Synapse Token request
Missing Links to Protocols on Synapse Site
Delete my account
anonymous access to project repository
i haven?t got my key
Uploading problem
normalization method
how to log out
Dataset download about ""
Question about documentation for profile validation
Not able to authenticate using all recommended ways
Evaluation of segmentation results on BraTS2021 validation
Adding/deleting/inserting rows into Synapse tables using SQL
How to batch download files from a table
Problems in download list
Help deleting duplicate account
Unable to access
API endpoints for Synapse command line client
Request to access BraTS 2021 Dataset for both training and validation
Need to make data publicly available
Download Fastq files and processed data from multiple studies
"Sorry, there is an error in submitting your request. Accessor 3443899 is listed more than one."
can't add administrator to the project syn23667188
Download and submit new controlled access data use certificate
[Inquiry on data] syn10468856 'ROSMAP-Proteomics (LC-SRM)'
Deleted entities not re-uploaded but restored somehow?
Ways to increase the size of the text in general? Scale down the figure size?
The Bibtex Citation of Synapse Abdominal CT data
boto3 ProfileNotFound Error
Access to syn7596712
Search for text within private wiki pages
Why the submit status is Recived rather than Scored?
GLASS Consortium data
Ways to split a big zip file into small ones
Inquiry on data access
Where can I find DUC of ROSMAP study?
could not find the data in syn25169976 to download
could not find the deposited dataset for syn25169976 for download
Error to download with granted access
How do I create a searchable a Discussion Board?
data access request for multiple samples
problem in download
Data set for research purpose?
What is an etag?
Trouble uploading DUC for data access request
Data Use Certificate Terms and Conditions
delete account
Challenge registration issue
remove account
Request Access error
How to write Data Use Certificate?
How long does it take to approve user profile?
Is there way to enable email notifications when files are uploaded?
how to download data
how to correlate BRATS2021 patient ID with TCIA IDs?
How to add an additional investigator to the already approved data request?
about Data Use Certificate
Adjust column width, or hide columns in "Files" browser
Stop at 99% when downloading files
Unable to download file
Unable able to resolve synapse plugin dependency
Table relationships?
Cannot read property 'Ml' of null
Different individual IDs of CMC_HBCC cohort
data can be downloaded from web site, but not through command line using the same user account.
multiple failures downloading 14G vcf file
HTML Limited rendering only error
Unable to Delete synapse table (user with right to edit)
how to request access
shared object ?PythonEmbedInR.dylib? not found when installing synapserutils
Following a discussion forum does not subscribe me to all threads
About NF dataset
Unknown column 'BipSeq' in 'where clause'
understanding S3 object url construction
Failure to download ~500 fastq files using 'synapse get'
Who needs to sign the documentation to validate a student's user profile?
Transferring data in synapse container to google cloud bucket
Cannot change storage to S3
recently obtained access permissions seemingly no longer apply to vcf.gz, but tbi downloads fine
Consistent failures trying to download large dataset
how to prepare the DUC submission in the case of collaborative study
Downloading subset of GENIE CNA data
Cant download files using synapse get
SSL certificate error with synapseclient
Jumping progress bar
Placing two images side by side in a wiki
option to specify output file name from `synapse get -q` CLI command?
Can't access "public" file
Preview compressed gzipped data
How to generate a synapse token for NRGR agreement?
Size of ROSMAP data
unified sample ids for ROSMAP vcf and RNA-seq
Is ?User? a namespace that is disabled by default?
unauthorized: authentication required
OpenProject in Docker?
Profile validation rejected
Access to dataset
Access to dataset
how my new team members can access to the data
Can?t open the app
Inquiry about AMP-AD _ROSMAP_WGS project id
I can't reply the email of Dream Challenge stuff
Inquiry about data download permission
Can I check the download history?
Delete Duplicated Account
Unable to download data
Evaluation Code for the Challenge
Stall on recursive download with CLI
Downloaded files not visible on the Synapse submission
Normal Expression data for breast tissue
Accessing Multiple datasets
resend synapse token after updated email
Cannot download data
Is the "Request Access" button disappear?
Calculating directory size
How to locate the wiki subpage id?
Downloads resetting constantly
I participate 2015 abdominal 13-organs segmentation, while I can't found my result in Leaderboard?
the table (.csv) uploaded in Synapse only shows a portion of the upper part in Preview.
Best practice of keeping folder contents properly updated if heavily modifying the folder after a period of time.
error ConnectionResetError
Unable to get the entity - Data download
How to find articles associated to a given Synapse dataset
Changing Storage Location on Project with files?
Default structure
time to receive profile validation?
PCAWG Xena -> You are not authorized to access the page requested. Who do I ask?
Can't delete team. How to find all entities team is shared on.
Duplicate account
Login problem
Phenotype information for ROSMAP metabolomic data?
Inquiring on how to map ROSMAP BAM files to SampleIDs in scRNA FASTQS
Clarification on the definition of "cis" gene-marker comparisons
Need help for a new one Synapse
Unable to find my submission on SC2 leaderboard
Dream3 challenge in silico network inference data missing
Python Client Table Query Questions
Delete the duplicated Synapse account
"synapse get" is hung after a new firewall is set up by IT.
Does the Multi-altas labelling 2015 challenge cease to function?
Linking tables and forms
Change Project Owner
Q regarding setting of the period of data availability?
synGet error
Research in progress done and process of integration with apps google docs and Websites including Github and onedrive
How do I make my folder available for public download?
Unable to access Synapse
Is it possible to search within a project Wiki from the web interface?
Submission to NCBI Databases from Synapse
Synapse HTTP error during data download
Problems uploading files to Synapse
Some questions about the final test of MOOD
OIDC Integration not working
Date Format
Data access question?
Programmatic retrieval/creation of DOI for folder?
Some questions about profile authentication.
Inviting members through an email is currently disabled.
Docker image push
Issue with syntax highlighting
Unable to upgrade or install `synapser`
Is it okay to publish findings in non-open access Journals?
Data access to syn20808134
Partial downloads using python client?
I can't login using the python client or cmd
Unable to push docker image to synapse
Dream challenge required?
Get challengeId and teamId
Downloading is killed after having downloaded a few files from a dataset
How to determine if principalId is for a user or a team in ACL?
Which covariates file was used in syn8484987?
PsychEncode data access portal is down?
Access to syn21125841
Recover accidentally deleted project
How to add users to a team as a Manager
Unable to load library(synapser)
Unable to access data after access approval
Unable to download the methylation data
Access to syn4976369
Unable to Install R Client
Sorry, you do not have sufficient privileges for access.
How to find entities by case insensitive name?
Restore Project
Alzheimer audio data
The given date is outside the time range allowed for submissions.
How to get dataFileHandleId in bulk for multiple files?
400 Client Error: File size must be at least one bytes: message.txt
RE: Validation of profile
API Search Question
SYN.query depreciated
Not able to push docker image
Entity has no path?
AMP-AD download speed (unbearably) slow
The full data for proteomics (syn17008935)
How to change downloading cache folder directory in Python?
Is it possible to get a list of synapse IDs and file names from a synapse directory without downloading all files first?
file expired in ICGC-TCGA-DREAM Somatic Mutation Calling Challenge --Tumor Heterogeneity and Evolution(syn2813581)
syn3388564 sample annotations
Downloading Column of Audio Files via Python/Command Line
Upload Error
synapseQuery functionality in synapser
Is it possible to have users sign up for notifications when wiki pages are updated/files uploaded? is not working properly
Acceptable Documentation for Identity Verification
Issues downloading tables and files using the older R client
How to download data e.g. syn4164376 from synapse to my own computer
Programmatically listing all projects shared with a given team
problem uploading data
Specify download folder in synapserutils
cannot "post" in my previous thread! So, have to post it here. Sorry for this strange post
Does prediction data set have to include all patients in test data?
Re-send token request
access to syn89614
Files mention under
More information on registration requirements
access to entity syn16803262
Adding Project Sharing Settings: "Anyone on the web"
Access to syn9803093
Slow speed downloading raw RNAseq data
View folder annotations
problem when downloading file
profile validation
Download files in parallel
problem in pandas install
problem installing synapseutils
Python synapseclient: installation fails with Python 3.7
trouble with manifest file
Feature reqest: Bulk hilighting of synapse IDs, along with rest of text
Error Creating EntityViewSchema
To submit a result, what is the EvaluationID?
Feature Request: Previewing Synapse IDs in directory tree
How to query by annotations in v1.9.0?
Custom storage locations - S3 bucket location requirement?
Invalid digital signature when making API request
Search within wiki
Synapse get returning empty manifest
Retrieving the file md5 given a synID?
Need help accessing new synapse tokens - link not working?
access to syn3242754
Null in my token
Fail to connect to server
How to query users via the Python library?
Reupload large file
Error message downloading data
How to delete a folder in a project?
Data removal from Synapse
Wiki style
pri-miRNA/pre-miRNA calling from RNAseq data of AMP-AD
Length distribution of RNA-seq reads
WGS data size of AMP-AD
Data push to NAS
Problems with data download using the R client's synGet()
Problem With Data Download
shiny apps in synapse
Embed shiny apps from
unable to download closed challenge data
How to create a synapseForm?
Setup a Challenge via the Web Site
KIRC microRNA expression data: preprocessing scheme
Downloads barely moving
Give download access to all synapse users on a project
Access to a Wiki
synapseutils saving to a single selected output directory
excruciatingly poor performance of synapse web site on 11 dec 2017
Uploading multiple files with the synapse client
How to deregister from a DREAM challenge?
Enumerate & Download All Tables
Access to syn7596712
How to download files of "Synapse demo project" by using python
downloading mPower data via Python
How do you find corresponding published articles associated with a data set?
How long does it take to get access approved for Autism data in doi:10.7303/syn4587609?
How long does it take to get a Data Use Statement approved?
Download Voice Analysis files for healthy participants?
Problem Uploading File to Synapse
Error uploading files to Synapse: File lock exceeded
Restricted access notification
Feature Request: assign a human readable URL to a synapse folder
Download No ICGC required approval files
MSK Data Update with 486 Gene Impact Test
plugging in google calendar does not work
Downloading files to non-cache
Changes to Entity Query API
Inadvertently deleted project
Issue with sharing settings
Suggestion for Discussion Board functionality
Need help!
Upload folders to Synapse
Create a new version of a file where the file name is different
NameError: global name 'returnDict' is not defined
Changes to Synapse share settings
Any way to link to specific sections within Wiki?
Project search engine
Not Working: Manual read csv to import data to tables
Re-ordering columns in Synapse Tables
Command line provenance with multiple output files
How can I get a list of folders in a project and a list of files in a folder from the R Synapse client?
md5 values for synapse directories
Message Delivery Failure(s)
The projects registered have disappeared from All
can not download data synapseclient.exceptions.SynapseHTTPError: 405 Client Error: Method Not Allowed
Can not download data and report error synapseclient.exceptions.SynapseHTTPError: 401 Client Error: Unauthorized
Suggested design pattern(s) for querying all projects shared with a "team"?
Synapse and Dataverse?
Wiki User Interface
file downloaded as NOT_SET
Entity download issue in Python SynapseClient 1.6.1
DNS errors accessing
"Registering" objects in s3 bucket after creation outside of Synapse.
Use of commercial cloud providers (DNANexus, SevenBridges) for analysis
Group By Row Labels Lost
Accessing Synapse thorugh API
Converting R dataframe to Synapse table
Feature request: Preview on UCSC bed files
Problem Accessing Files from Synapse using Bash
MySQL error from query
Timestamp issue
Python SynapseClient KeyError: u'Expires'
Dates in downloaded CSV file appear as a number
error for downloading files in batch
CSV format issues after downloading
How to upload data using synapse Command line client
Synthetic Challenge 6 - Truth files
syn2290704 : Face list for ADNI Test study data
Systematic table placement on wiki page bugs
Matching samples
old synapse link become invalid
couldnt download pilot data
How to download BAM after cghub is not working anymore
Mammo pilot data
Error in packaging (windows exe) Python script with SynapseClient
Where is the documentation on how to setup a .synapseConfig file?
Getting information from Synapse object
Viewing PDFs
Table tutorial in R appears broken
unable to see BAM files provenance on webpage after setting it by command line
ROSMAP sample name conflict
why i can't download files? though i have registered my account and i am logged in.
Change of ownership of Synapse entities
resume the download
A speedmeter?
Description field in Entity List
recursive data upload to synapse
Downloading files in batch
Is it possible to incorporate data that already resides in a public repository without having to copy it into Synapse?
There?s a mistake in my file! How do I update it to a new version?
How do I find a user?
How do I download a Synapse Table
Why can?t I download data when I am not logged in?
Is it possible to send an email to all of the members of my Synapse team?
How do I do a recursive download of all files/folders in a project/folder?
How do I push an r markdown file to a wiki?
Can I have private wiki content in a public project?

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