If I want to reference data in a public repo such as GEO in Synapse do I have to upload it?
Created by SynapseForumUser It is possible to incorporate data into Synapse without uploading it.
If you have a URL for the file (for example, http://www.ncbi.nlm.nih.gov/geo/download/?acc=GSE50451&format=file links to the raw data from the GEO dataset GSE50451), you can use this to create a Synapse `File` that links to it.
In the `R` and `Python` client (using the `synStore` or `synapseclient.Synapse.store` commands, repsectively), you use the URL as the `path` and set `synapseStore` to False. On the Synapse website, in the dialog box that comes from clicking the 'Upload or Link to File' button, use the 'Link to URL' tab.
Drop files to upload
Is it possible to incorporate data that already resides in a public repository without having to copy it into Synapse? page is loading…