Hello,
I try to download BAM files from a closed challenge ("ICGC-TCGA DREAM Mutation Calling challenge") but the url to download the files is for cghub. How can I get access to these data and how can I find out if there is available RNAseq data corresponding to these data?
Thank you,
Hecate
Created by Lisa Neums Hecate @RCS, I can confirm that I could only log in using my eRA Commons credentials (commonly used for dbGaP, among other things). @kkdang, any other ideas? For the link in the https://www.synapse.org/#!Synapse:syn312572/wiki/402585
I think only NIH staff can access the data on the website
https://bionimbus-pdc.opensciencedatacloud.org
I have tried the google and yahoo sign in. Neither worked.
Any suggestions for None-NIH user? Thanks! HI Lisa,
Do the instructions here answer your question?
https://www.synapse.org/#!Synapse:syn312572/wiki/402585 Thank you.
Unfortunatly GDC created their own IDs for the data and only the TCGA ID can help to identify the samples but not the bam UUID. I will try it on the forum for the challenge.
Thanks,
Hecate You might also post the question on the forum for that challenge (syn312572) so the challenge admins see it:
https://www.synapse.org/#!Synapse:syn312572/discussion/default CGHub no longer exists, and all data for TCGA is now in the NCI's Genomic Data Commons:
https://gdc.cancer.gov/
Hopefully it's straightforward from the sample names to identify the files of interest. I'll reach out to the challenge admins to see what could be done about the documentation there.
Drop files to upload
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