Hello community.
I know this is not the ICGC-TCGA-DREAM Somatic Mutation Calling Challenge discussion forum but seems the challenge discussion board is not that active...
I want to access the synthetic tumor and paired normal bam files (3 and 4) and I already have ICGC/TCGA and eRA commons access.
I tried every way to access the data (which are described here : https://www.synapse.org/#!Synapse:syn312572/wiki/60702)
I also checked the discussion board of ' ICGC-TCGA-DREAM Somatic Mutation Calling Challenge discussion forum' but I just found there were people who faced the same situation like me.
(https://www.synapse.org/#!Synapse:syn312572/discussion/threadId=3422)
Is there any way I can access the dataset?
Many thanks.
Best,
Ahn
Created by Junhak Ahn junhak @kellrott Any update for ICGC-TCGA-DREAM Somatic Mutation Calling Challenge data 4?
It seems that publication in 2022 (https://www.nature.com/articles/s41467-022-31765-8#code-availability) used the dataset.
Thanks! Unfortunately we don't have an authorized data distributor that can accept ICGC DACO credentials funded to share this data set. We can share the open ones via the SRA, but that system doesn't connect to ICGC DACO. @kellrott I do have ICGC DACO approval. Do you know where I can get ICGC-TCGA-DREAM Somatic Mutation Calling Challenge data 4 ? Thanks! @kellrott Thanks! Is there no way to access ICGC-TCGA-DREAM Somatic Mutation Calling Challenge data 4? not just 1-3? @junhak It seems the data are stored in another system and only listed in Synapse. The best I can do it to try to connect you with the challenge organizers.
@kellrott Can you address @junhak's question? @brucehoff
Hi, could you help me to solve this issue ?
Thank you
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