Hi, when I download RNA-seq fastq files via command using synapse, some files fail to download with errors.
With it, I cannot even get the metadata.tsv.
For example, when I used this command " synapse get -r syn21589959 ", or "synapse get -r syn2580853", it was happened.
I could not download about 100 samples, for example,
"RISK_184_rerun_S128_R1_001.fastq.gz"
"RISK_184_rerun_S128_R2_001.fastq.gz"
"RISK_187_rerun_S129_R1_001.fastq.gz"
"RISK_188_rerun_S130_R1_001.fastq.gz"
"RISK_188_rerun_S130_R2_001.fastq.gz"
"RISK_189_rerun_S131_R2_001.fastq.gz"
"RISK_207_redo_S44_R2_001.fastq.gz"
"RISK_227_redo_S56_R2_001.fastq.gz"
"RISK_229_redo_S64_R2_001.fastq.gz"
and, error massage was that
SynapseHTTPError: 400 Client Error:
Batch must contain at least one item
Are there any restrictions, such as files over 5 GB cannot be downloaded from S3 using the API?
Best,
Misato
Created by Misato Kaishima K-Misato I apologize for the inconvenience. Would you please submit the issue here? https://sagebionetworks.jira.com/servicedesk/customer/portal/9
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