Dear all,
I am facing a challenge to associate a given article to its Synapse ID or the opposite.
For instance, the syn4894912 dataset was generated under the MayoRNAseq study. However, I failed to find neither in Synapse nor in Pubmed articles related to this dataset or syn5550404, which is the main ID for the MayoRNAseq study.
On the other hand, the following article used the syn2580853 Synapse dataset in their analysis.
https://pubmed.ncbi.nlm.nih.gov/30297968/
I was able to find this article in the following site, but it was not associated to any Synapse ID.
https://adknowledgeportal.synapse.org/Explore/Publications?QueryWrapper0=%7B%22sql%22%3A%22SELECT%20*%5Cn%20%20FROM%20syn20448807%5Cn%20%20WHERE%20(%60pubmed_id%60%20LIKE%20%27%2530297968%25%27)%22%2C%22limit%22%3A25%2C%22offset%22%3A0%7D
I appreciate your time and attention.
Best regards,
Fabio
Created by Fabio Passetti fabiopas There isn't a guaranteed way to find any Synapse entity used in any publication. However Synapse gives users the ability to create a permanent DOI for any entity. We do this through the DataCite service which provides an index of cited work. Please see https://search.datacite.org/repositories/sagebio.synapse. This list will include the Synapse entities for which some person has requested a DOI. @brucehoff and @Mette - I appreciate your responses to my post.
However, my question is not restricted to a single dataset or a given article.
Generally speaking, is there a way to associate all Synapse IDs to publications that used such datasets (may be a text file)?
I appreciate again your time and attention.
Best regards,
Fabio @fabiopas - I recommend you reach out to the manuscript contact author for clarification on what data was used This forum is mostly for questions and issues about the Synapse system in general. Your question seems to be about a specific project. If you don't get an answer here, it may help to post to the project's discussion forum: https://www.synapse.org/#!Synapse:syn2580853/discussion/default
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