Hi I've been trying to implement the R cancer stemness prediction algorithm from the Pan-Cancer TCGA (http://tcgabiolinks.fmrp.usp.br/PanCanStem/mRNAsi.html). In order to build the prediction model I need access to "syn4976369". I was wondering who I would contact for access since has been released for publication. Thanks.
Created by Yung Lyou yunglyou Hi, I've been trying to check out the wiki page about syn4976369, but the page showed: I'm not authorized. Thank you. Xena sent me to the data page, so I had not seen the wiki. Will check it out and let you know if I have more questions. Thank you. -Nahtan Nathan:
Did you check out the wiki page one level up in the hierarchy: syn4976363 It has some details on the normalization Hello Yung,
I'm using your batch-corrected TCGA rna data from Xena in my work via:
https://xenabrowser.net/datapages/?dataset=EB%2B%2BAdjustPANCAN_IlluminaHiSeq_RNASeqV2.geneExp.xena&host=https%3A%2F%2Fpancanatlas.xenahubs.net&removeHub=https%3A%2F%2Fxena.treehouse.gi.ucsc.edu%3A443
The Xena metadata about how this data was created doesn't have details - can you fill me in on the method used for the batch correction, the precise starting data, or point me to the specific reference for this effort? Right now I'm not even sure what the base units are.
I greatly appreciate your work. Thanks very much,
Nathan Siemers
I can access the dataset now. Thank you so much! Do you mind trying again?