Hi!
After successful submissions on the express lane the main lane submissions failed in
case of SC1, SC2 breast and ovarian.
9654293
9654268
9654267
Could you please show me the log files for these submissions?
Thanks,
Ábel
Created by Ábel Fóthi FAbika Dear Abel,
Your submission is invalid. You should get an email about it soon.
Best,
Tom Thanks Tom!
In case of SC2 I receveid the following email:
Your submission "syn10930854" (ID: 9654268) to the Proteogenomics Subchallenge 2 Breast has been scored:
Your prediction file has been stored, but you will not have access to it.
But the submission dashboard shows INVALID.
Is it scored or invalid?
Dear Abel,
9654293
```
Imputing row 1/83 with 1668 missing, elapsed time: 0.557
Traceback (most recent call last):
File "/usr/local/lib/python3.6/site-packages/pandas/core/internals.py", line 4619, in create_block_manager_from_blocks
mgr = BlockManager(blocks, axes)
File "/usr/local/lib/python3.6/site-packages/pandas/core/internals.py", line 3028, in __init__
self._verify_integrity()
File "/usr/local/lib/python3.6/site-packages/pandas/core/internals.py", line 3239, in _verify_integrity
construction_error(tot_items, block.shape[1:], self.axes)
File "/usr/local/lib/python3.6/site-packages/pandas/core/internals.py", line 4603, in construction_error
passed, implied))
ValueError: Shape of passed values is (83, 8200), indices imply (83, 8203)
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "run_sc1.py", line 29, in
X_ordered = pd.DataFrame(data = np.hstack(new).T, index = X_filled.mean(axis = 1).sort_values().index, columns = X_incomplete.columns)
File "/usr/local/lib/python3.6/site-packages/pandas/core/frame.py", line 361, in __init__
copy=copy)
File "/usr/local/lib/python3.6/site-packages/pandas/core/frame.py", line 533, in _init_ndarray
return create_block_manager_from_blocks([values], [columns, index])
File "/usr/local/lib/python3.6/site-packages/pandas/core/internals.py", line 4626, in create_block_manager_from_blocks
construction_error(tot_items, blocks[0].shape[1:], axes, e)
File "/usr/local/lib/python3.6/site-packages/pandas/core/internals.py", line 4603, in construction_error
passed, implied))
ValueError: Shape of passed values is (83, 8200), indices imply (83, 8203)
```
9654268
```
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 40
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 35
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 42
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 43
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 41
warnings.warn('Y residual constant at iteration %s' % k)
Logs truncated because it exceeded size limit of 50kb
```
9654267
```
Imputing row 101/235 with 0 missing, elapsed time: 11.089
Imputing row 201/235 with 3 missing, elapsed time: 11.091
Imputing row 1/173 with 608 missing, elapsed time: 2.276
Imputing row 101/173 with 384 missing, elapsed time: 3.016
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 67
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 58
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 51
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:313: UserWarning: X scores are null at iteration 1
warnings.warn('X scores are null at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 36
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:313: UserWarning: X scores are null at iteration 7
warnings.warn('X scores are null at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 51
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 68
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 44
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 69
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:313: UserWarning: X scores are null at iteration 1
warnings.warn('X scores are null at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 27
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:313: UserWarning: X scores are null at iteration 7
warnings.warn('X scores are null at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:313: UserWarning: X scores are null at iteration 16
warnings.warn('X scores are null at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:313: UserWarning: X scores are null at iteration 10
warnings.warn('X scores are null at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 20
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 62
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 61
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 68
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:313: UserWarning: X scores are null at iteration 8
warnings.warn('X scores are null at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 52
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 36
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 63
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 64
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:313: UserWarning: X scores are null at iteration 2
warnings.warn('X scores are null at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:313: UserWarning: X scores are null at iteration 6
warnings.warn('X scores are null at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 55
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 27
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 65
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:313: UserWarning: X scores are null at iteration 5
warnings.warn('X scores are null at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 63
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 60
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 44
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 86
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:313: UserWarning: X scores are null at iteration 2
warnings.warn('X scores are null at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 59
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 34
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 43
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 34
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:313: UserWarning: X scores are null at iteration 1
warnings.warn('X scores are null at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 40
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 64
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 65
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 59
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:313: UserWarning: X scores are null at iteration 1
warnings.warn('X scores are null at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 60
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:313: UserWarning: X scores are null at iteration 8
warnings.warn('X scores are null at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 68
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 62
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:313: UserWarning: X scores are null at iteration 14
warnings.warn('X scores are null at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 63
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:313: UserWarning: X scores are null at iteration 12
warnings.warn('X scores are null at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 59
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 41
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:313: UserWarning: X scores are null at iteration 1
warnings.warn('X scores are null at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 66
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 35
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:313: UserWarning: X scores are null at iteration 3
warnings.warn('X scores are null at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 61
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 39
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 72
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:313: UserWarning: X scores are null at iteration 8
warnings.warn('X scores are null at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 35
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:313: UserWarning: X scores are null at iteration 6
warnings.warn('X scores are null at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 58
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 60
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 66
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 121
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 40
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:313: UserWarning: X scores are null at iteration 3
warnings.warn('X scores are null at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 59
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 65
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:313: UserWarning: X scores are null at iteration 7
warnings.warn('X scores are null at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:313: UserWarning: X scores are null at iteration 6
warnings.warn('X scores are null at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 58
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 38
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 31
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 55
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 78
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:313: UserWarning: X scores are null at iteration 1
warnings.warn('X scores are null at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 61
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 63
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 65
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 60
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:313: UserWarning: X scores are null at iteration 3
warnings.warn('X scores are null at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 64
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 70
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 29
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 65
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 64
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 36
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 46
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:287: UserWarning: Y residual constant at iteration 59
warnings.warn('Y residual constant at iteration %s' % k)
/usr/local/lib/python3.6/site-packages/sklearn/cross_decomposition/pls_.py:313: UserWarning: X scores are null at iteration 2
warnings.warn('X scores are null at iteration %s' % k)
```
Best,
Tom