Sorry for multi-post.
We want to know error logs.
Sincerely,
--
Sorry, but we were unable to process your submission to the Proteogenomics Subchallenge 3 Breast.
Please refer to the challenge instructions which can be found at https://www.synapse.org/#!Synapse:syn8228304/wiki/448381 and to the error message below:
submission name: syn11456497
submission ID: 9653979
Created by Yasuhiro Kambara kambarakun Please see:
https://www.synapse.org/#!Synapse:syn8228304/discussion/threadId=2922 Dear Yasuhiro,
Here is your log file:
```
/sc3_model_and_functions.py:21: RuntimeWarning: invalid value encountered in subtract
x_numer = x - x_base.min(axis=0)
/sc3_model_and_functions.py:22: RuntimeWarning: invalid value encountered in subtract
x_denom = xp.max(xp.hstack([(x_base.max(axis=0) - x_base.min(axis=0)), xp.array(xp.repeat(xp.finfo(float).eps, repeats=x_base.shape[1]).astype(xp.float32))]), axis=0)
Traceback (most recent call last):
File "/sc3_predict.py", line 74, in
chainer.serializers.load_hdf5(abspath_dir_models + '%s/chain_pro_to_common.h5' % name_file_or_dir, chain_pro_to_common)
File "/usr/local/lib/python3.5/dist-packages/chainer/serializers/hdf5.py", line 154, in load_hdf5
d.load(obj)
File "/usr/local/lib/python3.5/dist-packages/chainer/serializer.py", line 82, in load
obj.serialize(self)
File "/usr/local/lib/python3.5/dist-packages/chainer/link.py", line 795, in serialize
d[name].serialize(serializer[name])
File "/usr/local/lib/python3.5/dist-packages/chainer/link.py", line 551, in serialize
data = serializer(name, param.data)
File "/usr/local/lib/python3.5/dist-packages/chainer/serializers/hdf5.py", line 130, in __call__
dataset.read_direct(value)
File "/usr/local/lib/python3.5/dist-packages/h5py/_hl/dataset.py", line 656, in read_direct
for mspace in dest_sel.broadcast(source_sel.mshape):
File "/usr/local/lib/python3.5/dist-packages/h5py/_hl/selections.py", line 299, in broadcast
raise TypeError("Can't broadcast %s -> %s" % (target_shape, count))
TypeError: Can't broadcast (10006,) -> (10005,)```
Best,
Tom
I tried to debug comment out lines one by one.
--Is this memory error?--
I found returning error on loading trained models.
Drop files to upload
Our submission passed SC3 breast ex lane but failed main lane. page is loading…