We want to know error logs.
Sincerely,
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Sorry, but we were unable to process your submission to the Proteogenomics Subchallenge 3 Ovarian.
Please refer to the challenge instructions which can be found at https://www.synapse.org/#!Synapse:syn8228304/wiki/448381 and to the error message below:
submission name: syn11455381
submission ID: 9653786
Created by Yasuhiro Kambara kambarakun Dear Yasuhiro,
Here is your log file:
```
/sc3_model_and_functions.py:21: RuntimeWarning: invalid value encountered in subtract
x_numer = x - x.min(axis=0)
/sc3_model_and_functions.py:22: RuntimeWarning: invalid value encountered in subtract
x_denom = xp.max(xp.hstack([(x.max(axis=0) - x.min(axis=0)), xp.array(xp.repeat(xp.finfo(float).eps, repeats=x.shape[1]).astype(xp.float32))]), axis=0)```
Best,
Tom Sorry for repost...
We had debugged previous error and ran.
But next, validation error on main lane(ex lane passed).
Is this phosphoID error??
--
Sorry, but we were unable to validate your submission to the Proteogenomics Subchallenge 3 Ovarian.
Please refer to the challenge instructions which can be found at https://www.synapse.org/#!Synapse:syn8228304/wiki/448381 and to the error message below:
submission name: syn11455381
submission ID: 9653817 Thank you for your quick reply!! Your error log says:
/sc3_model_and_functions.py:21: RuntimeWarning: invalid value encountered in subtract
x_numer = x - x.min(axis=0)
/sc3_model_and_functions.py:22: RuntimeWarning: invalid value encountered in subtract
x_denom = xp.max(xp.hstack([(x.max(axis=0) - x.min(axis=0)), xp.array(xp.repeat(xp.finfo(float).eps, repeats=x.shape[1]).astype(xp.float32))]), axis=0)
Traceback (most recent call last):
File "/sc3_predict.py", line 44, in
xp_cna_to_pho = scale_feature_minus_one_to_one(xp.array(df_cna[df_cna.columns & df_pho.columns].iloc[:, 1:].values.T).astype(xp.float32))
File "/sc3_model_and_functions.py", line 27, in scale_feature_minus_one_to_one
return (scale_feature_zero_to_one(x) - 0.5) * 2
File "/sc3_model_and_functions.py", line 21, in scale_feature_zero_to_one
x_numer = x - x.min(axis=0)
File "/usr/local/lib/python3.5/dist-packages/numpy/core/_methods.py", line 29, in _amin
return umr_minimum(a, axis, None, out, keepdims)
ValueError: zero-size array to reduction operation minimum which has no identity
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Our submission passed SC3 ovarian ex lane but failed main lane. page is loading…