Hi organizers, We have been facing proteinID maching problem in PGX sub2 breast challenge. There is no error in express lane but final submission is with following error: "predictions.tsv: All proteinID in the goldstandard must also be in your file. You are missing: TGM1,DAPL1,RAPGEF3,HKDC1,TKTL1,SYS1,UPK1B,SUSD5,ZFP62,NPR1,AQP5,NGEF,SLC38A2,ENPP6,CRB2,TSPAN3,KLK8,ATP2B2,PTTG1IP,ADCY7,FAT2,CDS1,KDELR1,ALG8,ALG3,PNMA3,PAGE2,PKHD1L1,DPEP3,SLC9A6,CYP11A1,SOX17,DERL2,SLC35A3,CLDN1,CLDN4,CLDN6,PAX8,PLSCR4,GZMK,SLC35B1,ELOVL1,PCDH19,FLG,XAGE2,EPHA2,PLP2,CADPS,APH1A,MECOM,NECTIN3,ND4,PLPP1,PLPP2,KLHL14,RABL2A,CALB1,RGL3,ALG10,FADS3,FAM171A1,GLB1L2,EMILIN3,FAM20A,LRRC32,ATP1A2,COL21A1,TMEM231,SIGMAR1,PINX1,SEL1L3,ITM2C,UPK3B,CYTB,CCDC167,CYP2U1,PRUNE2,OGDHL,CBWD1,CALHM2,MFSD1,OVGP1,TMEM160,PCDHB8,PXMP2,TPSAB1,ST6GALNAC1,NRM,EBP,MUL1,SDHD" None of the above id is present in the "prospective_breast_pro_gold_express.txt" present as syn11378102 (https://www.synapse.org/#!Synapse:syn8564279) which has been uploaded on 14 Nov itself. Please advice. Its taking a lot of time and effort to debug where we have reasons to believe that testing files are not compatible with the gold standard given under training set folder. Thank you. GACT NCI

Created by Sandeep Kumar Dhanda skdhanda
Dear Sandeep, Apologies for the errors. I have now fixed the issue. best, Tom

goldstandard proteinIDs donot match between training data and final lane in Proteogenomics Subchallenge 2 Breast page is loading…