Hi
I submitted my image and received this message:
submission name: syn11170315
submission ID: 9643448
No prediction file generated, please check your log file
And I check the log file, it looks like my R code start to run.
I guess there are may be 2 reasons of it:
1. Cannot read file under /evaluation_data folder. I test my code by add /prospective_ova_rna_seq_sort_common_gene_15121.txt and other files into /evaluation folder, and it works. The file name of test data is like what https://www.synapse.org/#!Synapse:syn8228304/wiki/413428 described, right?
2. The running time is too long or cannot allocate enough memory. My code may requires at most 16GB memory and less than 30 min to finished each sub challenges if I use the data from expression lane (https://www.synapse.org/#!Synapse:syn8564279).
So, do you know what happened? I cannot find any error message from the log file.
Thank you.
Yiyi Li
Created by Yiyi Li Stargazer gtarex Hi all.
According to my log file, I realize that my code hangs during file reading step. It's just a simple R function like:
read.csv("/evaluation_data/prospective_ova_rna_seq_sort_common_gene_15121.txt", sep = "\t",row.names= 1)
So, you can tell me what happened?
Thank you Hi all,
The memory limit has not been implemented yet. Unfortunately, the submission took more than 4 hours to finish so it was killed. Just my guess, but it sounded like from another thread that the memory limit was 8-10GB, and the express-lane data is a small fraction in size of the real data, so you might be hitting memory issues.