Is it normal that the header for the breast cancer proteome samples doesn't match the rest of the other files? It seems to have the ovarian cancer sample identifiers.
```
==> retrospective_breast_CNA_median_sort_common_gene_16884.txt <==
Gene_ID A2-A0CM-01A-31D-A036-01 A2-A0D2-01A-21D-A036-01 A2-A0EQ-01A-11D-A036-01
==> retrospective_breast_rna_seq_sort_common_gene_15115.txt <==
Gene_ID A2-A0CM-01A-31R-A034-07 A2-A0D2-01A-21R-A034-07 A2-A0EQ-01A-11R-A034-07
==> retrospective_breast_proteome_all_gene.txt <==
Gene_ID TCGA-A2-A0CM TCGA-A2-A0D0 TCGA-A2-A0D1
```
Versus:
```
==> retrospective_ova_array_sort_common_gene_15632.txt <==
Gene_ID TCGA-04-1331 TCGA-04-1332 TCGA-04-1335
==> retrospective_ova_CNA_sort_common_gene_11859.txt <==
Gene_ID TCGA-04-1331 TCGA-04-1332 TCGA-04-1335
==> retrospective_ova_proteome_all_gene.txt <==
Gene_ID TCGA-09-1664 TCGA-09-2056 TCGA-13-1404
==> retrospective_ova_rna_seq_sort_common_gene_15632.txt <==
Gene_ID TCGA-04-1348 TCGA-04-1357 TCGA-04-1362
```
Also the project files (https://www.synapse.org/#!Synapse:syn8564280) appears to be empty. And I've also tried to redownload through the synapse command line but this time I'm not getting any files.
Thanks,
Created by 3347929 Dear Manuel,
The version you downloaded with full TCGA id has been replaced with concise id consistent with the proteome. Please refer to [TCGA barcode](https://wiki.nci.nih.gov/display/TCGA/TCGA+barcode) for detailed description of the sample id. All the files you need for the challenges are described in 3.3 - Accessing Data. The directory you refer to has no data you need for this competition. Feel free to let us know if any further question pops up.
Best,
Zhi
Drop files to upload
Mismatching sample header for Subchallenge 2, breast cancer page is loading…