spatialHeatmap

syn76055954

Created By Melissa Klein melissa.klein

program: ELITE
project: LC
summary: Visualization of single-cell, spatial, and other tissue-resolved omics data by overlaying quantitative assay values onto anatomical images. It combines spatial heatmaps with complementary clustering and network-based views.
toolType: Spatial Analysis for Single-Cell and Bulk Omics Data
contributor: Thomas Girke
displayName: spatialHeatmap
institution: University of California, Riverside
resourceType: softwareTool
softwareType: R/Bioconductor package and ShinyApp
toolHomepage: https://bioconductor.org/packages/spatialHeatmap/
documentation: https://www.bioconductor.org/packages/release/bioc/vignettes/spatialHeatmap/inst/doc/spatialHeatmap.html
toolInputData: bulk and single-cell assay data
toolOperation: Overlaying quantitative assay data onto anatomical images in form of heatmap coloring.
toolOutputData: tables images
toolInputFormat: quantitative assay data
toolOutputFormat: R and XML

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