Hi Admin,
Could i please get the log files for submission with id 9761270
Regards,
AI
posted 10/29/2025
Created by Aravind Krishnan Anand Iyer AravindKrishnanA Hi @AravindKrishnanA,
subID 9761270 received the following:
```
Traceback (most recent call last):
File "/home/user/main.py", line 27, in
adata_mtg = ad.read_h5ad('./input/data.h5ad')
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/user/.local/lib/python3.12/site-packages/anndata/_io/h5ad.py", line 262, in read_h5ad
with h5py.File(filename, "r") as f:
^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/user/.local/lib/python3.12/site-packages/h5py/_hl/files.py", line 566, in __init__
fid = make_fid(name, mode, userblock_size, fapl, fcpl, swmr=swmr)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/user/.local/lib/python3.12/site-packages/h5py/_hl/files.py", line 241, in make_fid
fid = h5f.open(name, flags, fapl=fapl)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "h5py/_objects.pyx", line 54, in h5py._objects.with_phil.wrapper
File "h5py/_objects.pyx", line 55, in h5py._objects.with_phil.wrapper
File "h5py/h5f.pyx", line 104, in h5py.h5f.open
FileNotFoundError: [Errno 2] Unable to synchronously open file (unable to open file: name = './input/data.h5ad', errno = 2, error message = 'No such file or directory', flags = 0, o_flags = 0)
```
A friendly reminder that the submission system mounts the input and output folders as `/input` and `/output`, respectively. Please note that these are at the root directory, rather than the current directory.
Hope this helps!