Dear organizers, could you send us the information about why the container failed? Thank you very much.

Created by Allan Miyazono tach
@paulinapglz99 , No worries! And thanks for confirming, here are the tail logs for that submission: ``` File "/app/python/gecko/.venv/lib/python3.12/site-packages/pandas/core/indexes/base.py", line 6212, in _get_indexer_strict self._raise_if_missing(keyarr, indexer, axis_name) File "/app/python/gecko/.venv/lib/python3.12/site-packages/pandas/core/indexes/base.py", line 6264, in _raise_if_missing raise KeyError(f"{not_found} not in index") KeyError: "['AC104689.2_AL033539.2_L5-IT'] not in index" ```
I’m so sorry, I meant the 9760775 Thank you for the observation
Hi @paulinapglz99 , SubID 9760782 seems to belong to another participant - did you mean 9760776 instead? (Unless I am incorrect and you are both part of the same team, but are participating individually?) Let me know.
Thank you for your response. We resubmitted the job, but we’d like to know again why the container failed. Sorry for the inconvenience. The ID is 9760782
Hi @paulinapglz99 ! I see the following error for subID 9760775: ``` FileNotFoundError: [Errno 2] No such file or directory: '/input/dataset.csv' ```
Hi @vchung! Hope you are doing well:) The team would like to ask If could you send us the information about our container failed? Now the submission ID 9760775 Thank you very much.$$\(\)$$
Hi @tach , The following error was received: ``` PermissionError: [Errno 13] Permission denied: 'python/gecko/src/gecko/ARACNe3_app_release' ``` Not sure if you are doing this already, but it may be helpful to run your container locally prior to submitting - are you able to run it locally by any chance? An example run you can do (that will behave similarly to the submission system) is: ``` docker run \ --rm \ --network none \ --volume /PATH/TO/INPUT_FOLDER/:/input:ro \ --volume $PWD/output:/output:rw \ --memory 110G --shm-size 2G \ YOUR_DOCKER_IMAGE ``` Hope this helps! Edit: fix run command

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