Dear organizers,
I recently tried my first submission, but got the error 'Container did not generate a file called predictions.csv'.
It showed up very quickly and I expected my code to take around 20 minutes to run. I'm guessing I messed up the paths and directory structures.
Could you please share the error logs for this submission? Name is syn70101303, submission ID is 9760548
Thanks,
Rafael
Created by Rafael Alves raesalves Thanks for the help :) It helps a lot, seems like I forgot to remove some code when preparing the submission :)
I'll try again soon! Hi @raesalves ,
Sorry for the delayed response!
For subIDs 9760548 and 9760551, the same traceback error was received:
```
Traceback (most recent call last):
File "/home/user/run_model.py", line 138, in
typer.run(main)
File "/home/user/run_model.py", line 90, in main
cell_stats_df = cell_stats.run_cell_stats_loop(
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/user/cell_stats.py", line 26, in run_cell_stats_loop
adnc_codes = h5py_file['obs/ADNC/codes']
~~~~~~~~~^^^^^^^^^^^^^^^^^^
File "h5py/_objects.pyx", line 56, in h5py._objects.with_phil.wrapper
File "h5py/_objects.pyx", line 57, in h5py._objects.with_phil.wrapper
File "/home/user/.local/lib/python3.12/site-packages/h5py/_hl/group.py", line 360, in __getitem__
oid = h5o.open(self.id, self._e(name), lapl=self._lapl)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "h5py/_objects.pyx", line 56, in h5py._objects.with_phil.wrapper
File "h5py/_objects.pyx", line 57, in h5py._objects.with_phil.wrapper
File "h5py/h5o.pyx", line 257, in h5py.h5o.open
KeyError: 'Unable to synchronously open object (component not found)'
```
Hope this helps. Follow-up: Same thing happened for a second try 9760551, in which I tried simplifying my directory structure and paths.
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