JH-2-100-19H33-94G2C.markdup.sorted.bam

syn51558306

Created By NF Service nf-osi-service

age: 65.0
sex: Female
assay: RNA-seq
organ: nerves
tissue: primary tumor
ageUnit: years
species: Homo sapiens
studyId: syn4939902
dataType: AlignedReads
platform: Illumina NovaSeq 6000
workflow: STAR and Salmon
Component: GenomicsAssayTemplate
aliquotID: 94G2C
diagnosis: Neurofibromatosis type 1
readDepth: No_report
studyName: The Johns Hopkins NF1 biospecimen repository
tumorType: Plexiform Neurofibroma
fileFormat: bam
initiative: Open Proposal Program
isCellLine: No
specimenID: JH-2-100-19H33
totalReads: 40796988.0
dataSubtype: processed
nf1Genotype: -/-
individualID: JH-2-100
resourceType: experimentalData
workflowLink: https://nf-co.re/rnaseq/3.11.2/output#star-and-salmon
fundingAgency: NTAP
isPrimaryCell: Yes
genomicReference: GRCh38
parentSpecimenID: JH-2-100_PN_PT
averageInsertSize: 994.0
averageReadLength: 132.0
averageBaseQuality: 36.1
readsMappedPercent: 100.0
pairsOnDifferentChr: 0.0
readsDuplicatedPercent: 23.22463364207181
specimenPreparationMethod: Flash frozen

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