JH-2-075-3HE68-C61FE.markdup.sorted.bam

syn51543805

Created By NF Service nf-osi-service

age: 42
sex: Male
assay: RNA-seq
tissue: primary tumor
ageUnit: years
studyId: syn4939902
workflow: STAR and Salmon
Component: GenomicsAssayTemplate
aliquotID: C61FE
readDepth: 43M_read pairs
studyName: The Johns Hopkins NF1 biospecimen repository
tumorType: Plexiform Neurofibroma
fileFormat: bam
initiative: Open Proposal Program
isCellLine: No
specimenID: JH-2-075-3HE68
totalReads: 74942913.0
dataSubtype: processed
nf1Genotype: -/-
individualID: JH-2-075
resourceType: experimentalData
workflowLink: https://nf-co.re/rnaseq/3.11.2/output#star-and-salmon
fundingAgency: NTAP
isPrimaryCell: Yes
genomicReference: GRCh38
parentSpecimenID: JH-2-075_PN_PT
averageInsertSize: 676.3
averageReadLength: 140.0
averageBaseQuality: 35.9
readsMappedPercent: 100.0
pairsOnDifferentChr: 0.0
readsDuplicatedPercent: 50.70738176403685
specimenPreparationMethod: Flash frozen

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