JH-2-084-AE169-B6471.markdup.sorted.bam

syn51543380

Created By NF Service nf-osi-service

age: 16.0
sex: Male
assay: RNA-seq
tissue: primary tumor
ageUnit: years
species: Homo sapiens
studyId: syn4939902
dataType: AlignedReads
platform: Illumina NovaSeq 6000
workflow: STAR and Salmon
Component: GenomicsAssayTemplate
aliquotID: B6471
diagnosis: Neurofibromatosis type 1
readDepth: 40M_read pairs
studyName: The Johns Hopkins NF1 biospecimen repository
tumorType: Plexiform Neurofibroma
fileFormat: bam
initiative: Open Proposal Program
isCellLine: No
specimenID: JH-2-084-AE169
totalReads: 73766257.0
dataSubtype: processed
nf1Genotype: +/-
individualID: JH-2-084
resourceType: experimentalData
workflowLink: https://nf-co.re/rnaseq/3.11.2/output#star-and-salmon
fundingAgency: NTAP
isPrimaryCell: Yes
genomicReference: GRCh38
parentSpecimenID: JH-2-084_PN_PT
averageInsertSize: 730.9
averageReadLength: 139.0
averageBaseQuality: 36.0
readsMappedPercent: 100.0
pairsOnDifferentChr: 0.0
readsDuplicatedPercent: 37.19595125993718
specimenPreparationMethod: Flash frozen

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