JH-2-023-91HBD-2G2E2.markdup.sorted.bam

syn51542045

Created By NF Service nf-osi-service

age: 26.0
sex: Male
assay: RNA-seq
organ: nerves
tissue: recurrent tumor
ageUnit: years
species: Homo sapiens
studyId: syn4939902
dataType: AlignedReads
platform: Illumina NovaSeq 6000
workflow: STAR and Salmon
Component: GenomicsAssayTemplate
aliquotID: 2G2E2
diagnosis: Neurofibromatosis type 1
readDepth: No_report
studyName: The Johns Hopkins NF1 biospecimen repository
tumorType: Malignant Peripheral Nerve Sheath Tumor
fileFormat: bam
initiative: Open Proposal Program
isCellLine: No
specimenID: JH-2-023-91HBD
totalReads: 47094968.0
dataSubtype: processed
nf1Genotype: -/-
individualID: JH-2-023
resourceType: experimentalData
workflowLink: https://nf-co.re/rnaseq/3.11.2/output#star-and-salmon
fundingAgency: NTAP
isPrimaryCell: Yes
genomicReference: GRCh38
parentSpecimenID: JH-2-023-d_MPNST_RT
averageInsertSize: 797.6
averageReadLength: 135.0
averageBaseQuality: 36.2
readsMappedPercent: 100.0
pairsOnDifferentChr: 0.0
readsDuplicatedPercent: 17.494684357785314
specimenPreparationMethod: Flash frozen

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