JH-2-023-1G2BC-82G48.markdup.sorted.bam

syn51542000

Created By NF Service nf-osi-service

age: 24.0
sex: Male
assay: RNA-seq
tissue: primary tumor
species: Homo sapiens
studyId: syn4939902
dataType: AlignedReads
platform: Illumina HiSeq 2500
workflow: STAR and Salmon
aliquotID: 82G48
diagnosis: Neurofibromatosis type 1
readDepth: 25M
studyName: The Johns Hopkins NF1 biospecimen repository
tumorType: Malignant Peripheral Nerve Sheath Tumor
fileFormat: bam
initiative: Open Proposal Program
isCellLine: No
specimenID: JH-2-023-1G2BC
totalReads: 122316889.0
dataSubtype: processed
nf1Genotype: -/-
nf2Genotype: +/+
individualID: JH-2-023
resourceType: experimentalData
workflowLink: https://nf-co.re/rnaseq/3.11.2/output#star-and-salmon
fundingAgency: NTAP
isPrimaryCell: TRUE
genomicReference: GRCh38
averageInsertSize: 1473.9
averageReadLength: 99.0
averageBaseQuality: 36.7
readsMappedPercent: 100.0
pairsOnDifferentChr: 0.0
readsDuplicatedPercent: 44.5029075257138

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