JH-2-120-C4924-2HG48.markdup.sorted.bam

syn51541677

Created By NF Service nf-osi-service

age: 48.0
sex: Male
assay: RNA-seq
tissue: primary tumor
ageUnit: years
species: Homo sapiens
studyId: syn4939902
dataType: AlignedReads
workflow: STAR and Salmon
Component: RNASeqTemplate
aliquotID: 2HG48
diagnosis: Neurofibromatosis type 1
studyName: The Johns Hopkins NF1 biospecimen repository
tumorType: Plexiform Neurofibroma
fileFormat: bam
initiative: Open Proposal Program
isCellLine: No
specimenID: JH-2-120-C4924
totalReads: 61548597.0
dataSubtype: processed
individualID: JH-2-120
resourceType: experimentalData
workflowLink: https://nf-co.re/rnaseq/3.11.2/output#star-and-salmon
fundingAgency: NTAP
genomicReference: GRCh38
parentSpecimenID: JH-2-120_PN_PT_right_flank_T2
averageInsertSize: 801.2
averageReadLength: 134.0
averageBaseQuality: 35.5
readsMappedPercent: 100.0
pairsOnDifferentChr: 0.0
readsDuplicatedPercent: 19.296486969475517
specimenPreparationMethod: Flash frozen

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