JH-2-117-D3BH9-C4H9E.markdup.sorted.bam

syn51541623

Created By NF Service nf-osi-service

age: 55.0
sex: Female
assay: RNA-seq
tissue: primary tumor
ageUnit: years
species: Homo sapiens
studyId: syn4939902
dataType: AlignedReads
workflow: STAR and Salmon
Component: RNASeqTemplate
aliquotID: C4H9E
diagnosis: Neurofibromatosis type 1
studyName: The Johns Hopkins NF1 biospecimen repository
tumorType: Malignant Peripheral Nerve Sheath Tumor
fileFormat: bam
initiative: Open Proposal Program
isCellLine: No
specimenID: JH-2-117-D3BH9
totalReads: 60019069.0
dataSubtype: processed
individualID: JH-2-117
resourceType: experimentalData
workflowLink: https://nf-co.re/rnaseq/3.11.2/output#star-and-salmon
fundingAgency: NTAP
genomicReference: GRCh38
parentSpecimenID: JH-2-117_MPNST_PT_right_back
averageInsertSize: 763.5
averageReadLength: 133.0
averageBaseQuality: 35.5
readsMappedPercent: 100.0
pairsOnDifferentChr: 0.0
readsDuplicatedPercent: 20.582130322614635
specimenPreparationMethod: Flash frozen

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