JH-2-015-55B8D-2B9EB.markdup.sorted.bam

syn51541280

Created By NF Service nf-osi-service

age: 23.0
sex: Male
assay: RNA-seq
tissue: primary tumor
ageUnit: years
species: Homo sapiens
studyId: syn4939902
dataType: AlignedReads
platform: Illumina HiSeq 2500
workflow: STAR and Salmon
Component: GenomicsAssayTemplate
aliquotID: 2B9EB
diagnosis: Neurofibromatosis type 1
readDepth: 50M
studyName: The Johns Hopkins NF1 biospecimen repository
tumorType: Malignant Peripheral Nerve Sheath Tumor
fileFormat: bam
initiative: Open Proposal Program
isCellLine: No
specimenID: JH-2-015-55B8D
totalReads: 126377001.0
dataSubtype: processed
nf1Genotype: -/-
nf2Genotype: +/+
individualID: JH-2-015
resourceType: experimentalData
workflowLink: https://nf-co.re/rnaseq/3.11.2/output#star-and-salmon
fundingAgency: NTAP
isPrimaryCell: Yes
genomicReference: GRCh38
parentSpecimenID: JH-2-015_MPNST_PT
averageInsertSize: 1411.9
averageReadLength: 99.0
averageBaseQuality: 36.8
readsMappedPercent: 100.0
pairsOnDifferentChr: 0.0
readsDuplicatedPercent: 38.89532874735649
specimenPreparationMethod: Flash frozen

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