JH-2-016-4H597-15C1D.markdup.sorted.bam

syn51541154

Created By NF Service nf-osi-service

age: 18.0
sex: Female
assay: RNA-seq
tissue: primary tumor
ageUnit: years
species: Homo sapiens
studyId: syn4939902
dataType: AlignedReads
platform: Illumina HiSeq 2500
workflow: STAR and Salmon
Component: GenomicsAssayTemplate
aliquotID: 15C1D
diagnosis: Neurofibromatosis type 1
readDepth: 50M
studyName: The Johns Hopkins NF1 biospecimen repository
tumorType: Malignant Peripheral Nerve Sheath Tumor
fileFormat: bam
initiative: Open Proposal Program
isCellLine: No
specimenID: JH-2-016-4H597
totalReads: 101744080.0
dataSubtype: processed
nf1Genotype: -/-
nf2Genotype: +/+
individualID: JH-2-016
resourceType: experimentalData
workflowLink: https://nf-co.re/rnaseq/3.11.2/output#star-and-salmon
fundingAgency: NTAP
isPrimaryCell: Yes
genomicReference: GRCh38
parentSpecimenID: JH-2-016_MPNST_PT
averageInsertSize: 1670.2
averageReadLength: 98.0
averageBaseQuality: 36.7
readsMappedPercent: 100.0
pairsOnDifferentChr: 0.0
readsDuplicatedPercent: 41.10302044109102
specimenPreparationMethod: Flash frozen

JH-2-016-4H597-15C1D.markdup.sorted.bam page is loading…