JH-2-001-8A1B1-7B15A.markdup.sorted.bam

syn51541048

Created By NF Service nf-osi-service

age: 29.0
sex: Female
assay: RNA-seq
tissue: primary tumor
species: Human
studyId: syn4939902
dataType: AlignedReads
platform: Illumina HiSeq 2500
workflow: STAR and Salmon
aliquotID: 7B15A
readDepth: 25M
studyName: The Johns Hopkins NF1 biospecimen repository
tumorType: Plexiform Neurofibroma
fileFormat: bam
initiative: Open Proposal Program
isCellLine: No
specimenID: JH-2-001-8A1B1
totalReads: 119507232.0
dataSubtype: processed
nf1Genotype: -/-
nf2Genotype: +/+
individualID: JH-2-001
resourceType: experimentalData
workflowLink: https://nf-co.re/rnaseq/3.11.2/output#star-and-salmon
fundingAgency: NTAP
isPrimaryCell: TRUE
genomicReference: GRCh38
averageInsertSize: 1672.5
averageReadLength: 99.0
averageBaseQuality: 36.8
readsMappedPercent: 100.0
pairsOnDifferentChr: 0.0
readsDuplicatedPercent: 38.634563136731344

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