JH-2-060-99B2D-GG71G.markdup.sorted.bam

syn51540264

Created By NF Service nf-osi-service

age: 20.0
sex: Male
assay: RNA-seq
tissue: cell line
ageUnit: years
species: Homo sapiens
studyId: syn4939902
dataType: AlignedReads
platform: Illumina NovaSeq 6000
workflow: STAR and Salmon
Component: GenomicsAssayTemplate
aliquotID: GG71G
diagnosis: Neurofibromatosis type 1
readDepth: 31M_read pairs
studyName: The Johns Hopkins NF1 biospecimen repository
tumorType: Plexiform Neurofibroma
fileFormat: bam
initiative: Open Proposal Program
isCellLine: No
specimenID: JH-2-060-99B2D
totalReads: 57632572.0
dataSubtype: processed
nf1Genotype: -/-
individualID: JH-2-060
resourceType: experimentalData
workflowLink: https://nf-co.re/rnaseq/3.11.2/output#star-and-salmon
fundingAgency: NTAP
isPrimaryCell: No
genomicReference: GRCh38
parentSpecimenID: JH-2-060_PN_CL
averageInsertSize: 675.8
averageReadLength: 139.0
averageBaseQuality: 36.1
readsMappedPercent: 100.0
pairsOnDifferentChr: 0.0
readsDuplicatedPercent: 28.37274206676044
specimenPreparationMethod: Flash frozen

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