JH-2-023-876HC-622H1.markdup.sorted.bam

syn51540232

Created By NF Service nf-osi-service

age: 24.0
sex: Male
assay: RNA-seq
tissue: primary tumor
species: Homo sapiens
studyId: syn4939902
dataType: AlignedReads
workflow: STAR and Salmon
Component: RNASeqTemplate
aliquotID: 622H1
studyName: The Johns Hopkins NF1 biospecimen repository
tumorType: Malignant Peripheral Nerve Sheath Tumor
fileFormat: bam
initiative: Open Proposal Program
isCellLine: No
specimenID: JH-2-023-876HC
totalReads: 117048039.0
dataSubtype: processed
individualID: JH-2-023
resourceType: experimentalData
workflowLink: https://nf-co.re/rnaseq/3.11.2/output#star-and-salmon
fundingAgency: NTAP
isPrimaryCell: No
genomicReference: GRCh38
parentSpecimenID: JH-2-023_MPNST_PT
averageInsertSize: 1850.6
averageReadLength: 143.0
averageBaseQuality: 35.8
readsMappedPercent: 100.0
pairsOnDifferentChr: 0.0
readsDuplicatedPercent: 38.62776803975332
specimenPreparationMethod: Flash frozen

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