Hi,
I have recently started using this data. I noticed there are 3 rows worth of data for some SNPs, with varying sample sizes, betas, etc. Can someone help me to understand what the different rows correspond to?
Here is an example:
ID CHROM GENPOS ALLELE0 ALLELE1 A1FREQ INFO
1: 4:108826383:T:C:imp:v1 4 107905227 T C 0.0392175 0.961961
2: 4:108826383:T:C:imp:v1 4 107905227 T C 0.0397412 0.962773
3: 4:108826383:T:C:imp:v1 4 107905227 T C 0.0392264 0.961966
N TEST BETA SE CHISQ LOG10P EXTRA rsid
1: 33995 ADD -0.01752520 0.0184051 0.906674 0.467248 NA rs10000006
2: 31042 ADD 0.01554010 0.0188887 0.676865 0.386509 NA rs10000006
3: 33533 ADD -0.00711116 0.0181844 0.152926 0.157544 NA rs10000006
POS19 chr pos
1: 108826383 4 108826383
2: 108826383 4 108826383
3: 108826383 4 108826383
The example comes from the A1BG_P04217_OID30771_v1_Inflammation_II.tar file.
Thank you!