H_ZK-10974509.cram
syn39181652
Created By
Karen Schwander karen2
age: Unavailable
sex: Male
assay: wholeGenomeSeq
grant: U19AG063893
study: The Long Life Family Study
access: 3-DK-DS-NPU
consent: 3
country: Denmark
freemix: 0
pct_10x: 0.994
pct_20x: 0.987
project: LLFS
runType: pairedEnd
species: Human
dataType: genomicVariants
entityId: syn39181652
studyKey: LLFS
Component: AssayWholeGenomeSequencingTemplate
visitcode: 1
consortium: ELITE
fileFormat: cram
isStranded: FALSE
readLength: 150
resultUnit: Not Applicable
rnaBatchID: Not Applicable
sampleType: Whole Blood
specimenID: 13470_vc1b
consentCode: 3
countryCode: 208
dataSubtype: raw
libraryPrep: KapaHyperPrep
speciesName: Homo sapiens
individualID: I5KGCQ75LS
resourceType: experimentalData
speciesGroup: Mammal
aligned_reads: 883368323
isModelSystem: FALSE
mean_coverage: 39.425954
valueReported: Not Applicable
alignment_rate: 0.998249061
libraryBatchID: Not Applicable
libraryVersion: KapaHyperPrep PCR-free
repositoryName: Not Applicable
transcriptType: Not Applicable
dataRestriction: Controlled
readLengthUnits: bp
haploid_coverage: 40.89852323
platformLocation: McDonnell Genome Institute at Washington University St. Louis MO
readStrandOrigin: Not Applicable
sequencingBatchID: 7
measurementTechnique: Whole Genome Sequencing
referenceTranscriptID: Not Applicable
familyStudyParticipant: Yes
libraryPreparationMethod: Illumina DNA PCR-Free Prep Kit
technologyPlatformVersion: Illumina NovaSeq 6000
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