H_ZK-10739308.cram
syn38636628
Created By
Karen Schwander karen2
age: Unavailable
sex: Female
assay: wholeGenomeSeq
grant: U19AG063893
study: The Long Life Family Study
access: 3-DK-DS-NPU
consent: 3
country: Denmark
freemix: 0
pct_10x: 0.992
pct_20x: 0.967
project: LLFS
runType: pairedEnd
species: Human
dataType: genomicVariants
entityId: syn38636628
studyKey: LLFS
Component: AssayWholeGenomeSequencingTemplate
visitcode: 1
consortium: ELITE
fileFormat: cram
isStranded: FALSE
readLength: 150
resultUnit: Not Applicable
rnaBatchID: Not Applicable
sampleType: Whole Blood
specimenID: 12172_vc1b
consentCode: 3
countryCode: 208
dataSubtype: raw
libraryPrep: KapaHyperPrep
speciesName: Homo sapiens
individualID: UBP7VLPL2Q
resourceType: experimentalData
speciesGroup: Mammal
aligned_reads: 722090688
isModelSystem: FALSE
mean_coverage: 31.575411
valueReported: Not Applicable
alignment_rate: 0.999002272
libraryBatchID: Not Applicable
libraryVersion: KapaHyperPrep PCR-free
repositoryName: Not Applicable
transcriptType: Not Applicable
dataRestriction: Controlled
readLengthUnits: bp
haploid_coverage: 33.80720395
platformLocation: McDonnell Genome Institute at Washington University St. Louis MO
readStrandOrigin: Not Applicable
sequencingBatchID: 10
measurementTechnique: Whole Genome Sequencing
referenceTranscriptID: Not Applicable
familyStudyParticipant: Yes
libraryPreparationMethod: Illumina DNA PCR-Free Prep Kit
technologyPlatformVersion: Illumina NovaSeq 6000
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