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title: MPNST EGA Raw RNA-Seq Data funder: Other creator: David Miller Katherine Piculell license: https://creativecommons.org/licenses/by/4.0/ species: Homo sapiens studyId: syn32128792 dataType: gene expression keywords: MPNST NF1 RNA-seq fastq GeM Consortium accessType: Controlled Access contributor: NFRI - Genomics of MPNST (GeM) Consortium Boston Children's Hospital description: The Genomics of MPNST (GeM) Consortium dataset includes de-identified whole genome sequencing data (.bam) for germline samples (DNA primarily derived from blood) sequenced at standard (30x) coverage (n=88) and for tumor samples (DNA derived from fresh frozen tissue) sequenced at 90x coverage (n=105). This dataset also includes transcriptome profiling data (.fastq) for paired normal nerve samples (n=7) and for tumor samples (n=132). diseaseFocus: Neurofibromatosis type 1 alternateName: Genomics of Malignant Peripheral Nerve Sheath Tumor (MPNST) manifestation: Malignant Peripheral Nerve Sheath Tumor (MPNST) specimenCount: 90 individualCount: 42 visualizeDataOn: ega.dataset:EGAD00001008608 conditionsOfAccess: Data must be requested and accessed through the European Genome-phenome Archive (EGA), dataset EGAD00001008608. measurementTechnique: RNA-seq croissant_file_s3_object: https://synapse-croissant-metadata.s3.us-east-1.amazonaws.com/EGA+Raw+Data+%28requires+approval+on+EGA%29_syn38299187.3_datasetCollection_syn50913342_croissant.jsonld
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