H_ZK-38008173.cram
syn36643198
Created By
Karen Schwander karen2
age: Unavailable
sex: Female
assay: wholeGenomeSeq
grant: U19AG063893
study: The Long Life Family Study
access: 3-US-DS-NPU
consent: 3
country: US
freemix: 0
pct_10x: 0.992
pct_20x: 0.94
project: LLFS
runType: pairedEnd
species: Human
dataType: genomicVariants
entityId: syn36643198
studyKey: LLFS
Component: AssayWholeGenomeSequencingTemplate
visitcode: 1
consortium: ELITE
fileFormat: cram
isStranded: FALSE
readLength: 150
resultUnit: Not Applicable
rnaBatchID: Not Applicable
sampleType: Saliva
specimenID: 7793_vc1s
consentCode: 3
countryCode: 840
dataSubtype: raw
libraryPrep: KapaHyperPrep
speciesName: Homo sapiens
individualID: F7RQXPIIWU
resourceType: experimentalData
speciesGroup: Mammal
aligned_reads: 652679372
isModelSystem: FALSE
mean_coverage: 29.348695
valueReported: Not Applicable
alignment_rate: 0.767270227
libraryBatchID: Not Applicable
libraryVersion: KapaHyperPrep PCR-free
repositoryName: Not Applicable
transcriptType: Not Applicable
dataRestriction: Controlled
readLengthUnits: bp
haploid_coverage: 30.66306684
platformLocation: McDonnell Genome Institute at Washington University St. Louis MO
readStrandOrigin: Not Applicable
sequencingBatchID: 16
measurementTechnique: Whole Genome Sequencing
referenceTranscriptID: Not Applicable
familyStudyParticipant: Yes
libraryPreparationMethod: Illumina DNA PCR-Free Prep Kit
technologyPlatformVersion: Illumina NovaSeq 6000
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