Hello all, first of all, thank your efforts, providing us with such useful information. I would like to get the mitochondrial genotypes from the release3. I see in the data that only autosomes and sex chromosomes are included. Are the mitochondrial variants somewhere hidden in the files or we'll have to manually call them? Thanks a lot! Xenofon

Created by Xenofon Giannoulis Xenofon
To clarify, the raw data is the iDAT files. You will need to generate the mitochondria calls based on them
Thanks for your interest in the data. The raw data should have the mitochondria SNPs. That set is distributed between release 1 and 3. See here: https://www.synapse.org/#!Synapse:syn22000412

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