Hi Mette, For the eQTL data (syn4622659), I wonder whether SNP_allele1 of an eQTL is the effect allele (i.e., coding allele). Thank you in advance. Ting

Created by uqtqi2
Allele 1 is the effect allele in those analyses. In other words, when beta is positive, carrying more copies of allele 1 is associated with higher expression. I hope that helps.

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