Hello, I'm trying to find out more information about how ROSMAP_Residualized_counts_(diagnosis).tsv (syn26967454), and other similar files (e.g., ROSMAP_Normalized_counts_(CQN).tsv, ROSMAP_Residualized_counts_(age-death).tsv, etc.,) were processed. The provenance does not show a script associated with such files. Can someone direct me to where I can find more information about the processing of these files? Thanks.

Created by Robert Valenzuela rkvalenzuela
Hi Abby - I have included the results of this analysis in a paper I am currently writing and the results are amazing. How do I cite this work?
Hi Abby - I have included the results of this analysis in a paper I am currently writing and the results are amazing. How do I cite this work?
When I follow the link for the YAML config file for, say, ROSMAP (syn26967460), no preview is available for this file. Has APOE4 variation been removed from ROSMAP_Residualized_counts(diagnosis).tsv (syn26967454)?
Hi there, the folder wiki [here](https://www.synapse.org/#!Synapse:syn26720676) has some information on how these files were generated. The analysis used the [sageseqr package](https://sage-bionetworks.github.io/sageseqr/), which uses a YAML config file to specify the inputs and parameters for the analysis of each cohort. These config files can be found in syn30821563.

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