Hello?
Our group download Mayo_Proteomics_TC_proteinoutput.txt(https://www.synapse.org/#!Synapse:syn7431988).
But we don?t know what information is useful. If I want to get clean data, are there any recommended ways or references?
Thanks.
Created by Li Dazhi ZHIZHIZHI Hi there, the folder wiki [here](https://www.synapse.org/#!Synapse:syn7431760) has information on the MaxQuant software parameters used for protein quantification by the contributors of this data. You might look into the [MaxQuant documentation](http://coxdocs.org/doku.php?id=maxquant:start) to find more information on the search outputs from this software and typical downstream data cleaning. I hope that helps as a starting point!
Best,
Abby
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