Dear all,
I have a question concerning the syn10930306 dataset of exon counts for the MC-CAA Bam files. Which reference genome (hg19, hg38) or GTF file (gencode.v37lift37.annotation.gtf is the file I'm using for my exon counts) was used to produce the exon counts? I would like to know so I can try to replicate the results. Thank you very much for your help in advance.
With Appreciation,
Christian
Created by Christian Perez cmiperez Hi Christian,
The MC-CAA exon counts in this file were produced using the hg19 reference genome. Details on the pipelines used for each can be found on [this page](https://adknowledgeportal.synapse.org/Explore/Studies/DetailsPage?Study=syn9779506) under the section "Methods: Gene Expression (RNAseq)".
Best,
Abby