Hi,
I am looking to assess protein quantification differences across CDR scores in the proteomics datasets. I have downloaded syn6100412 for TRAITS and syn6100414 for PROTEINOUTPUT. I have two questions related to the table:
1. The protein data is present as "intensity", iBAQ intensity, and LFQ intensity. I am having difficulty finding which was used to define protein expression. Could someone describe the methods used to go from this quantified data, presumably normalize to some control input present, batch control, and obtain the final levels?
2. Could someone confirm what "Majority protein IDs" dictates? Is there a distinction between "sp ..." "tr ..." "REV_sp " "REV_tr " "CON_" etc. ?
Thank you so much for your time.
Best,
Shon
Created by Skoren Is the information here helpful? syn5759470