Hi,
We have approval to access ROSMAP data, however trying to download the data does not seem to give me the entire data set. For example, ROSMAP idkey files shows a total of 1205 WGS files, however downloading this data for 'IndivStudyAnalysis' group gives ~50 VCF files.
Can you please let me know if there's a better way to download the entire ROSMAP study in a more efficient manner, and the storage requirements for this data set.
Appreciate all the help.
Thanks
Shar
Created by sgujja The only clinical information distributed through Synapse is in this file syn3191087, but there is more data on these cohorts through Rush. See here: http://www.radc.rush.edu/ Hi Mette,
Could you please let me know if there's drug treatment information available for ROSMAP cohort study?
Thanks
Shar The miRNA is array based, and not available as individual files per sample. I recommend going directly to the assay folder and download from there (see links at bottom of page here https://www.synapse.org/#!Synapse:syn3219045). If there still is an inconsistency between the idkey file and the samples available, please let us know Hi Mette,
I am trying to download data for all the 1788 subjects for the ROSMAP cohort study. The data types I am interested in for now are WGS, RNAseq, miRNAseq, and DNA methylation. Using the synapse command for each type I don't seem to have all the files.
In addition to WGS, miRNAseq files in the id key file shows ~1786 files for all the subject. Using the synapse I get ~740 *.RCC files.
Can you please let me know if there's a way to get these counts consistent with the information provided in the ROSMAP idkey file.
Thanks
Shar Each vcf file have all samples divided by chromosome. See here for more info on the WGS: syn10901595