Hi Synapse Team, Thank you so much for sharing this valuable dataset. The description states that "The count matrix was generated from sequencing reads deposited at Synapse (**syn2580853**, syn52293417, **syn2580853**, syn52339332). " the "syn2580853" is repeated. Would you please confirm this? Best regards, Vaibhav

Created by vaibhav janve janveva1
Hi @maflot, Thank you so much for update. I appreciate it.
Hi @janveva1, Apologies for the confusion and for the delayed reply. You are correct that syn2580853 was listed twice. This was due to the initial mapping, where syn2580853 was used as the ROSMAP / AMP-AD source for multiple snRNA-seq datasets. The correct Synapse IDs for the sequencing reads used to generate the count matrix are: - Blanchard et al. 2022, https://doi.org/10.1038/s41586-022-05439-w : syn2580853 - Mathys et al. 2023, https://doi.org/10.1016/j.cell.2023.08.039 : syn52293417 - Mathys et al. 2024, https://doi.org/10.1038/s41586-024-07606-7 : syn52293417 - Green et al. 2024, https://doi.org/10.1038/s41586-024-07871-6 : syn31512863 - De Jager Lab 2025: syn52339332 We will update the dataset description accordingly. Best regards, Matthias
Hi @janveva1, I have reached out to the data contributors to clarify the correct syn IDs of the sequencing reads used to generate the count matrix. CC'ing @maflot here. We will get back to you once we have more information. Please let me know in the meantime if there is anything else I can assist with. Best, Emma

syn65460889 - sequencing reads Synapse IDs (syn2580853, syn52293417, syn2580853, syn52339332). page is loading…