0% mitochondrial reads in neurotypical reference samples in syn61680896?

Hello, In syn61680896 (SEA-AD MTG snRNAseq) I find no cells with any mitochondrial reads. Are all cells with any mitochondrial reads removed from the neurotypical references? Or are all mitochondrial genes removed? Thanks,

Created by Ashay Patel aopatel
Hi @aopatel, thanks for reaching out. Could you clarify how you are calculating mitochondrial read percentage, along with the donor and specimen IDs for which you are doing so?
Hello @aopatel, I am CC'ing @irika.sea-ad and @eitan.kaplan who can provide more specific context on the QC metrics and processing details for this study. Best, Emma
Hello, Apologies for the delayed response. I have reached out to the team regarding the mitochondrial reads and we will get back to you once we have more information. Please let me know in the meantime if there is anything else I can assist with. Best, Melissa

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Hello, In syn61680896 (SEA-AD MTG snRNAseq) I find no cells with any mitochondrial reads. Are all cells with any mitochondrial reads removed from the neurotypical references? Or are all mitochondrial genes removed? Thanks,

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