syn53182733 corrupted?

The bam file cannot be converted back to fastq properly with the follow error: FileTruncatedException: Premature end of file: This file size is also comparably smaller than those in the same folder. Is it possible it's corrupted in the uploading process?

Created by Qi Wang qwang178
Hello @qwang178, Thanks for your question. I was able to convert this bam file to paired fastq files using Samtools, however it did give me a "[W::bam_hdr_read] EOF marker is absent. The input is probably truncated" warning, which is very suspicious. I will reach out to the data contributors to see if they have a non-corrupted version of the file. Best, Will

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The bam file cannot be converted back to fastq properly with the follow error: FileTruncatedException: Premature end of file: This file size is also comparably smaller than those in the same folder. Is it possible it's corrupted in the uploading process?

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