Hi everyone, I hope you're doing well. I’m currently working with the dataset associated with project syn22024496, and I would like to know if there is a way to determine which patient corresponds to each FASTQ file within this project. I’ve reviewed the metadata file "ROSMAP_clinical.cvs" available but couldn’t find a clear mapping. If anyone has insights or knows where this information might be documented, I would greatly appreciate your guidance. Thank you in advance for your help!

Created by Fryda Fernanda Solis Roldan Frydasolis
Hello @Frydasolis, Thank you for your question. I believe the missing link you are looking for is in the file Annotations themselves, which contain a specimenID and a individualID for each file. These can be accessed by clicking on the Annotations button on the website (right next to the large "Download Options" button), or accessed programmatically. Here are the links to the Python and R functions for accessing file annotations: https://python-docs.synapse.org/reference/client/#synapseclient.Synapse.get_annotations https://r-docs.synapse.org/reference/synGetAnnotations.html Best, Will

Project syn22024496 single cell monocytes page is loading…