Created by Prerak Desai milkbugdoctor Thanks a lot for the explanation. It makes sense.
Regards,
Prerak T. Desai Thanks so much.
I found another post that explains what happened with these samples: https://www.synapse.org/Synapse:syn2580853/discussion/threadId=11022
Specifically, the data contributor said "they are associated with a small fraction of pools that failed due to various technical reasons (wet lab and/or sequencing center). We aimed to release all raw data "as is" so we included them in the data release."
So it sounds like you should ignore these files. Hopefully that helps,
Jaclyn We have been trying to work with the fastq files deposited in https://www.synapse.org/Synapse:syn57373409.
Samples seem to have been sequenced across two lanes but for 12 samples FASTQ files for one of the lanes is virtually empty. Would be possible to make sure that this is not a file upload issue
Here are the details of the samples affected:
NPSAD_20201019_C # only one run available
NPSAD_20201021_A # both runs affected
NPSAD_20201022_A
NPSAD_20201013_A
NPSAD_20201028_A
NPSAD_20201029_A
NPSAD_20201030_A
NPSAD_20201104_C
NPSAD_20201015_C
NPSAD_20201027_C
NPSAD_20201028_C
NPSAD_20201029_C
Appreciate your help on this
Regards,
Prerak T. Desai Hello,
Can you please provide some more detail about your issues so I know how to best help you?
Thank you,
Jaclyn