I'm searching for metadata that connects SNPid to individual Specimen IDs within GWAS datasets. Despite extensive searching, I haven't found relevant metadata that details this relationship.
I specifically need GWAS summary statistics where each sample is associated with a set of SNPs. Any guidance or assistance in locating this information would be greatly appreciated. I'd appreciate any help.
Created by Mohammadsadeq Mottaqi mmottaqii Hello @mmottaqii,
Apologies for the slow response here. If I'm understanding correctly, you are looking for a way to link SNIPids in the DLPFC_ROSMAP_cis_eQTL_release.csv eQTL results to specimen ID's in the rosmap study. I don't believe this is possible, as the eQTL results are based on SNPs across a population and do not contain individual level results. However, you can find SNPs associated with individual samples from the ROSMAP study here: https://www.synapse.org/Synapse:syn17008936, from either whole genome sequencing or SNP array.
Thanks and let me know if I'm misunderstanding your questions.
Best,
Will
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