SNP values syn3157329

Hi, Can someone help me understand the values in these files? There are many 2s, 1.5XXXX; what does that mean, and what is the reference genome for this data? I couldn't find a very useful reference. Thanks a lot! Xiaoqing

Created by Xiaoqing Huang XiaoqingHuang
@wpoehlm Thanks will. This is very helpful!
hello @XiaoqingHuang, Sorry for the slow response. I found a previous discussion that I believe should answer your question, but let me know if it does not: https://www.synapse.org/#!Synapse:syn2580853/discussion/threadId=8855 As for the reference genome, it looks like the SNP array can be mapped to GRCh38 coordinates: https://docs.gdc.cancer.gov/Encyclopedia/pages/Affymetrix_SNP_6.0/ Best, Will
@Mette Thanks!

Your web browser must have JavaScript enabled in order for this application to display correctly.
If you are an automated web crawler from a search engine, follow this AJAX application crawl link

Hi, Can someone help me understand the values in these files? There are many 2s, 1.5XXXX; what does that mean, and what is the reference genome for this data? I couldn't find a very useful reference. Thanks a lot! Xiaoqing

Drop files to upload

SNP values syn3157329 page is loading…