Hello,
We are trying to download RNAseq fastq file annotations from the ROSMAP study e.g. syn21589959. We're able to view the annotations for each individual file by clicking the 'Annotations' button in the top right of a file on the Synapse web page. However, we want to download the annotations for a whole collection of samples simultaneously.
To do this, we tried to follow step 7 in this information on how to use annotations: https://help.adknowledgeportal.org/apd/Use-Case-%231:-Find-and-Download-Data-Associated-With-a-Selected-Study.2426535991.html , but for us clicking "Download options" in our ROSMAP dataset (syn21589959) only gives two options: "Add to download cart" and "Programmatic options", it doesn't have the "Export table" option that is described in step 7.
Is the only option to download the annotations programmatically?
Thanks
Colette
Created by Colette Moses cmoses Hi Colette,
It is possible to download the annotations from the AD Knowledge Portal. However, the download annotations option is not available on the Synapse page you are viewing.
Try the following:
1. Navigate to ROSMAP project on the Portal: https://adknowledgeportal.synapse.org/Explore/Studies/DetailsPage/StudyData?Study=syn3219045
2. Filter the files as needed
3. Click on the down arrow
4. Click on Export table
Let me know how this works.
Rich
Drop files to upload
Bulk download of fastq file annotations from ROSMAP study page is loading…