Hi everyone,
Thank you for this resource! I was interested in doing some differential gene expression analyses with this data, however I am a little confused on which data is available. I saw that there should be a transcriptcountmatrixallsamples.tsv file that contains the kallisto estimated counts as well as effective length. However, in the web interface I only see the following expression matrices in the current_release folder:
gene_tpm_matrix_all_samples.tsv
transcript_tpm_matrix_all_samples.tsv.gz
transcript_tpms_all_samples.tsv.gz
I am unsure if this is an issue on my end, or if there is some sort of error?
Thanks for your time!
Created by Joseph Bendik jbendik Hi @jbendik Thank you for your interest in the data. Right now, we do not have the transcript count matrix and effective length files in the current release. However, we are planning to upload the files soon. Please check back after 11/21/2025.
Drop files to upload
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